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Forest Products Laboratory
One Gifford Pinchot Drive
Madison, WI 53726-2398
Phone: (608) 231-9200
Fax: (608) 231-9592
Email

 

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Daniel Cullen
Daniel Cullen

Daniel Cullen

Institute for Microbial and Biochemical Sciences
Unit: FPL-4712
Research Microbiologist
One Gifford Pinchot Drive
Madison, WI
United States
53726-2398

Phone: 608-231-9468
daniel.cullen@usda.gov

Current Research

Our main goal is to develop a fundamental understanding of the molecular genetics and physiology of wood decay fungi, particularly as it relates to mechanisms of lignocelulose degradation. Within this broad area, my labs seeks (a) to elucidate the underlying genetics of lignin degrading white rot fungi including the number, structure, organization and regulation of genes relevant to lignocellulose conversions, (b) to advance our understanding of the biochemistry of essential enzymes, (c) to fully develop fundamental genetics of a representative brown rot fungi, and (d) to advance our understanding of gene function via high throughput approaches suitable for whole genomes.Genome investigations have focused principally on the white rot fungus Phanerochaete chrysosporium and the brown rot fungus Postia placenta. However, our collaborations with the Department of Energy's Joint Genome Institute have recently expanded to include the related white rot fungi, Ceriporiopsis subvermispora (http://www.jgi.doe.gov/sequencing/why/csubvermispora.html) and Phlebiopsis gigantea. In addition to their central role in carbon cycling, these wood decay fungi are representative of the basidiomycetes, a broad taxa including mycorrhizae, plant, human and animal pathogens, edible forms, and various saprophytes. Accordingly, my lab also contributes to large international teams examining the distribution and role of these fungi in forest soils, particularly following fire disturbance.


Research Interest

  • Molecular genetics of filamentous fungi
  • High throughput analysis of fungal transcriptomes and proteomes
  • Mechanisms of wood decay
  • Enzyme discovery for applications in bioenergy, bioremediation, and pulp and paper processing


Education

  • University of Wisconsin, Madison, Ph.D. , 1981
  • State University of New York at Stony Brook, B.S. , 1975

Professional Organizations

  • American Society for Microbiology, Member
  • Applied and Environmental Microbiology, Editor
  • National Science Foundation and Department of Energy, Advisory Panels

Below are the 114 US Forest Service publications sorted by year. You may re-sort the list by: Title, Date Posted, Category, Publication or Year.

Publication Year: 2021
 
Title: Omics analyses and biochemical study of Phlebiopsis gigantea elucidate its degradation strategy of wood extractives
Source: Scientific Reports
Author(s) Iwata, Mana ; Gutiérrez, Ana ; Marques, Gisela ; Sabat, Grzegorz ; Kersten, Philip J.; Cullen, Daniel ; Bhatnagar, Jennifer M.; Yadav, Jagjit ; Lipzen, Anna ; Yoshinaga, Yuko ; Sharma, Aditi ; Adam, Catherine ; Daum, Christopher ; Ng, Vivian ; Grigoriev, Igor V; Hori, Chiaki
Year: 2021   view abstract, download publication »
Title: The characteristics of insoluble softwood substrates affect fungal morphology, secretome composition, and hydrolytic efficiency of enzymes produced by Trichoderma reesei
Source: Biotechnology for Biofuels. 14(1). 4406. 30 p.
Author(s) Novy, Vera ; Nielsen, Fredrik ; Cullen, Daniel ; Sabat, Grzegorz ; Houtman, Carl J.; Hunt, Christopher G.
Year: 2021   view abstract, download publication »
Publication Year: 2020
 
Title: Conserved white-rot enzymatic mechanism for wood decay in the Basidiomycota genus Pycnoporus
Source: DNA Research. 27(2). 14 p.
Author(s) Miyauchi, Shingo ; Hage, Hayat ; Drula, Elodie ; Lesage-Meessen, Laurence ; Berrin, Jean-Guy ; Navarro, David ; Favel, Anne ; Chaduli, Delphine ; Grisel, Sacha ; Haon, Mireille ; Piumi, François ; Levasseur, Anthony ; Lomascolo, Anne ; Ahrendt, Steven ; Barry, Kerrie ; LaButti, Kurt ; Chevret, Didier ; Daum, Chris ; Mariette, Jérôme ; Klopp, Christophe ; Cullen, Daniel ; de Vries, Ronald ; Gathman, Allen ; Hainaut, Matthieu ; Henrissat, Bernard ; Hildén, Kristiina ; Kües, Ursula ; Lilly, Walt ; Lipzen, Anna ; Mäkelä, Miia ; Martinez, Angel ; Morel-Rouhier, Mélanie ; Morin, Emmanuelle ; Pangilinan, Jasmyn ; Ram, Arthur ; Wösten, Han ; Ruiz-Dueñas, Francisco ; Riley, Robert ; Record, Eric ; Grigoriev, Igor ; Rosso, Marie-Noëlle
Year: 2020   view abstract, download publication »
Title: Genomic Analysis Enlightens Agaricales Lifestyle Evolution and Increasing Peroxidase Diversity
Source: Molecular Biology and Evolution
Author(s) Ruiz-Dueñas, Francisco ; Barrasa, José ; Sánchez-García, Marisol ; Camarero, Susana ; Miyauchi, Shingo ; Serrano, Ana ; Linde, Dolores ; Babiker, Rashid ; Drula, Elodie ; Ayuso-Fernández, Iván ; Pacheco, Remedios ; Padilla, Guillermo ; Ferreira, Patricia ; Barriuso, Jorge ; Kellner, Harald ; Castanera, Raúl ; Alfaro, Manuel ; Ramírez, Lucía ; Pisabarro, Antonio ; Riley, Robert ; Kuo, Alan ; Andreopoulos, William ; LaButti, Kurt ; Pangilinan, Jasmyn ; Tritt, Andrew ; Lipzen, Anna ; He, Guifen ; Yan, Mi ; Ng, Vivian ; Grigoriev, Igor ; Cullen, Daniel ; Martin, Francis ; Rosso, Marie-Noëlle ; Henrissat, Bernard ; Hibbett, David ; Martínez, Angel T.
Year: 2020   view abstract, download publication »
Title: Identifying transcription factors that reduce wood recalcitrance and improve enzymatic degradation of xylem cell wall in Populus
Source: Scientific Reports
Author(s) Hori, Chiaki ; Takata, Naoki ; Lam, Pui Ying; Tobimatsu, Yuki ; Nagano, Soichiro ; Mortimer, Jenny C.; Cullen, Dan
Year: 2020   view abstract, download publication »
Title: Mechanism of extractive degradation by Phlebiopsis gigantea
Source: Protiome xchange dataset. Accession number PXD021332. Hinxton, Cambridge, UK: EMBL-EBI.
Author(s) Sabat, G. ; Cullen, D.
Year: 2020   view abstract, download publication »
Publication Year: 2019
 
Title: Evolution of substrate-specific gene expression and RNA editing in brown rot wood-decaying fungi
Source: The ISME Journal. 13(6): 1391-1403.
Author(s) Wu, Baojun ; Gaskell, Jill ; Zhang, Jiwei ; Toapanta, Christina ; Ahrendt, Steven ; Grigoriev, Igor V; Blanchette, Robert A.; Schilling, Jonathan S.; Master, Emma ; Cullen, Daniel ; Hibbett, David S.
Year: 2019   view abstract, download publication »
Title: The foliar endophyte Phialocephala scopiformis DAOMC 229536 proteome when grown on wood used as the sole carbon source
Source: Microbiology Resource Announcements. 8(6). 3 p.
Author(s) Bhatnagar, Jennifer M.; Sabat, Grzegorz ; Cullen, Daniel
Year: 2019   view abstract, download publication »
Publication Year: 2018
 
Title: Multi-omic analyses of extensively decayed Pinus contorta reveal expression of a diverse array of lignocellulose-degrading enzymes
Source: Applied and Environmental Microbiology. 84(20): 1-41.
Author(s) Hori, Chiaki ; Gaskell, Jill ; Cullen, Dan ; Sabat, Grzegorz ; Stewart, Philip E.; Lail, Kathleen ; Peng, Yi ; Barry, Kerrie ; Grigoriev, Igor V; Kohler, Annegret ; Fauchery, Laure ; Martin, Francis ; Zeiner, Carolyn A.; Bhatnagar, Jennifer M.
Year: 2018   view abstract, download publication »
Title: Substrate-specific differential gene expression and RNA editing in the brown rot fungus Fomitopsis pinicola
Source: Applied and Environmental Microbiology. 84(16): 1-19.
Author(s) Wu, Baojun ; Gaskell, Jill ; Held, Benjamin W.; Toapanta, Cristina ; Vuong, Thu ; Ahrendt, Steven ; Lipzen, Anna ; Zhang, Jiwei ; Schilling, Jonathan S.; Master, Emma ; Grigoriev, Igor V; Blanchette, Robert A.; Cullen, Dan ; Hibbett, David S.
Year: 2018   view abstract, download publication »
Publication Year: 2017
 
Title: Draft genome sequence of a monokaryotic model brown-rot fungus Postia (Rhodonia) placenta SB12
Source: Genomics Data. 14: 21-23.
Author(s) Gaskell, Jill; Kersten, Phil; Larrondo, Luis F.; Canessa, Paulo; Martinez, Diego; Hibbett, David; Schmoll, Monika; Kubicek, Christian P.; Martinez, Angel T.; Yadav, Jagjit; Master, Emma; Magnuson, Jon Karl; Yaver, Debbie; Berka, Randy; Lail, Kathleen; Chen, Cindy; LaButti, Kurt; Nolan, Matt; Lipzen, Anna; Aerts, Andrea; Riley, Robert; Barry, Kerrie; Henrissat, Bernard; Blanchette, Robert; Grigoriev, Igor V.; Cullen, Dan
Year: 2017   view abstract, download publication »
Publication Year: 2016
 
Title: Draft genome sequence of the white-rot fungus Obba rivulosa 3A-2
Source: Genome Announcements, 4(5). pp. 1-2.
Author(s) Miettinen, Otto; Riley, Robert; Barry, Kerrie; Cullen, Daniel; de Vries, Ronald P.; Hainaut, Matthieu; Hatakka, Annele; Henrissat, Bernard; Hilden, Kristiina; Kuo, Rita; LaButti, Kurt; Lipzen, Anna; Makela, Miia R.; Sandor, Laura; Spatafora, Joseph W.; Grigoriev, Igor V.; Hibbett, David S.
Year: 2016   view abstract, download publication »
Title: Gene expression patterns of wood decay fungi Postia placenta and Phanerochaete chrysosporium are influenced by wood substrate composition during degradation
Source: Applied and Environmental Microbiology, 82(14)
Author(s) Skyba, Oleksandr; Cullen, Daniel; Douglas, Carl J.; Mansfield, Shawn D.
Year: 2016   view abstract, download publication »
Title: Genetic bases of fungal white rot wood decay predicted by phylogenomic analysis of correlated gene-phenotype evolution
Source: Molecular Biology and Evolution. 34(1): 35-44.
Author(s) Nagy, László G.; Riley, Robert; Bergmann, Philip J.; Krizsán, Krisztina; Martin, Francis M.; Grigoriev, Igor V.; Cullen, Dan; Hibbett, David S.
Year: 2016   view abstract, download publication »
Title: Heterologous production and characterization of two glyoxal oxidases from Pycnoporus cinnabarinus
Source: Applied and Environmental Microbiology, 82(16)
Author(s) Daou, Marianne; Piumi, François; Cullen, Daniel; Record, Eric; Faulds, Craig B.
Year: 2016   view abstract, download publication »
Title: Prospects for bioprocess development based on recent genome advances in lignocellulose degrading basidiomycetes
Source: In: Gene Expression Systems in Fungi: Advancements and applications. pp. 161-181.
Author(s) Hori, Chiaki; Cullen, Daniel
Year: 2016   view abstract, download publication »
Title: Transcriptome and secretome analyses of the wood decay fungus Wolfiporia cocos support alternative mechanisms of lignocellulose conversion
Source: Applied and Environmental Microbiology, 82(13): 3979-3987
Author(s) Gaskell, Jill; Blanchette, Robert A.; Stewart, Philip E.; BonDurant, Sandra Splinter; Adams, Marie; Sabat, Grzegorz; Kersten, Philip; Cullen, Daniel
Year: 2016   view abstract, download publication »
Publication Year: 2015
 
Title: Prospects and challenges for fungal metatranscriptomics of complex communities
Source: Fungal Ecology, Corrected proof. 5p.
Author(s) Kuske, Cheryl R.; Hesse, Cedar N.; Challacombe, Jean F.; Cullen, Daniel; Herr, Joshua R.; Mueller, Rebecca C.; Tsang, Adrian; Vilgalys, Rytas
Year: 2015   view abstract, download publication »
Publication Year: 2014
 
Title: Analysis of the Phlebiopsis gigantea Genome, Transcriptome and Secretome Provides Insight into Its Pioneer Colonization Strategies of Wood
Source: PLOS Genet Volume 10, Number 12, December 2014; 20 p.
Author(s) Hori, Chiaki; Ishida, Takuya; Igarashi, Kiyohiko; Samejima, Masahiro; Suzuki, Hitoshi; Master, Emma; Ferreira, Patricia; Ruiz-Duenas, Francisco J.; Held, Benjamin; Canessa, Paulo; Larrondo, Luis F.; Schmoll, Monika; Druzhinina, Irina S.; Kubicek, Christian P.; Gaskell, Jill A.; Kersten, Phil; St. John, Franz; Glasner, Jeremy; Sabat, Grzegorz; Bondurant, Sandra Splinter; Syed, Khajamohiddin; Yadav, Jagjit; Mgbeahuruike, Anthony C.; Kovalchuk, Andriy; Asiegbu, Fred O.; Lackner, Gerald; Hoffmeister, Dirk; Recoret, Jorge; Gutierrez, Ana; Sun, Hui; Lindquist, Erika; Barry, Kerrie; Riley, Robert; Grigoriev, Igor V.; Henrissat, Bernard; Kues, Ursula; Berka, Randy M.; Martinez, Angel T.; Covert, Sarah F.; Blanchette, Robert A.; Cullen, Daniel
Year: 2014   view abstract, download publication »
Title: Chapter 3: Wood Decay
Source: The Ecological Genomics of Fungi, First Edition. Edited by Francis Martin. © 2014 John Wiley & Sons, Inc. Published 2014 by John Wiley & Sons, Inc. Section 2, saprotrophic fungi, Chapter 3, 2014; pp. 43-62.
Author(s) Cullen, Dan
Year: 2014   view abstract, download publication »
Title: Copper radical oxidases and related extracellular oxidoreductases of wood-decay Agaricomycetes
Source: Fungal Genetics and Biology, Volume 72, 2014; pp. 124-130.
Author(s) Kersten, Phil; Cullen, Dan
Year: 2014   view abstract, download publication »
Title: Extensive sampling of basidiomycete genomes demonstrates inadequacy of the white-rot/brown-rot paradigm for wood decay fungi
Source: PNAS, July 8, 2014, Volume 111, Number 27, 2014; pp.9923-9928.
Author(s) Riley, Robert; Salamov, Asaf A.; Brown, Daren W.; Nagy, Laszlo G.; Floudas, Dimitrios; Held, Benjamin W.; Levasseur, Anthony; Lombard, Vincent; Morin, Emmanuelle; Otillar, Robert; Lindquist, Erika A.; Sun, Hui; LaButti, Kurt M.; Schmutz, Jeremy; Jabbour, Dina; Luo, Hong; Baker, Scott E.; Pisabarro, Antonio G.; Walton, Jonathan D.; Blanchette, Robert A.; Henrissat, Bernard; Martin, Francis; Cullen, Daniel; Hibbett, David S.; Grigoriev, Igor V.
Year: 2014   view abstract, download publication »
Title: Influence of Populus Genotype on Gene Expression by the Wood Decay Fungus Phanerochaete chrysosporium
Source: Appl. Environ. Microbiol. 2014, Volume 80, Number 18, 2014; pp. 5828-5835.
Author(s) Gaskell, Jill; Marty, Amber; Mozuch, Michael; Kersten, Philip J.; Bondurant, Sandra Splinter; Sabat, Grzegorz; Azarpira, Ali; Ralph, John; Skyba, Oleksandr; Mansfield, Shawn D.; Blanchette, Robert A.; Cullen, Dan
Year: 2014   view abstract, download publication »
Title: Temporal Alterations in the Secretome of the Selective Ligninolytic Fungus Ceriporipsis subvermispora during growth on Aspen Wood Reveal this Organism's Strategy for Degrading Lighnocellulose
Source: Appl. Environ. Microbiol. 2014, Volume 80, Number 7, pp. 2062-2070.
Author(s) Hori, Chiaki; Gaskell, Jill; Igarashi, Kiyohiko; Kersten, Phil; Mozuch, Michael; Samejima, Masahiro; Cullen, Dan
Year: 2014   view abstract, download publication »
Publication Year: 2013
 
Title: A comparative genomic analysis of the oxidative enzymes potentially involved in lignin degradation by Agaricus bisporus
Source: Fungal Genetics and Biology Volume 55, 2013; pp. 22-31.
Author(s) Doddapaneni, Harshavardhan; Subramanian, Venkataramanan; Fu, Bolei; Cullen, Dan
Year: 2013   view abstract, download publication »
Title: Chapter 13: Recent Advances on the Genomics of Litter- and Soil-Inhabiting Agaricomycetes
Source: B.A. Horwitz et al. (eds.), Genomics of Soil- and Plant-Associated Fungi, Soil Biology 36, 2013; pp. 311-332.
Author(s) Kersten, Phil; Cullen, Dan
Year: 2013   view abstract, download publication »
Title: Chapter 5: Organopollutant Degradation by Wood Decay Basidiomycetes
Source: In: The Mycota, Agricultural Applications (Kempken, F. ed.), 2 Ed., Springer-Verlag, Berlin. 2013; pp. 115-144.
Author(s) Hadar, Yitzhak; Cullen, Daniel
Year: 2013   view abstract, download publication »
Title: Genomewide analysis of polysaccharides degrading enzymes in 11 white- and brown-rot Polyporales provides insight into mechanisms of wood decay
Source: Mycologia, Volume 105, Number 6, 2013; pp. 1412–1427.
Author(s) Hori, Chiaki; Gaskell, Jill; Igarashi, Kiyohiko; Samejima, Masahiro; Hibbett, David; Henrissat, Bernard; Cullen, Dan
Year: 2013   view abstract, download publication »
Title: Integration of Chemical and Biological Catalysis: Production of Furylglycolic Acid from Glucose via Cortalcerone
Source: ACS Catal. Volume 3, 2013; pp. 2689-2693.
Author(s) Schwartz, Thomas J.; Goodman, Samuel M.; Osmundsen, Christian M.; Taarning, Esben; Mozuch, Michael D.; Gaskell, Jill; Cullen, Daniel; Kersten, Philip J.; Dumesic, James A.
Year: 2013   view abstract, download publication »
Publication Year: 2012
 
Title: Comparative genomics of Ceriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis
Source: PNAS , April 3, 2012, volume 109, number 14;2012
Author(s) Fernandez-Fueyo, Elena; Ruiz-Dueñas, Francisco J.; Ferreira, Patricia; Floudas, Dimitrios; Hibbett, David S.; Canessa, Paulo; Larrondo, Luis F.; James, Tim Y.; Seelenfreund, Daniela; Lobos, Sergio; Polanco, Rubén; Tello, Mario; Honda, Yoichi; Watanabe, Takahito; Watanabe, Takashi; Ryu, Jae San; Kubicek, Christian P.; Schmoll, Monika; Gaskell, Jill; Hammel, Kenneth E.; St. John, Franz J.; Wymelenberg, Amber Vanden; Sabat, Grzegorz; BonDurant, Sandra Splinter; Syed, Khajamohiddin; Yadav, Jagjit S.; Dodapaneni, Harshavardhan; Subramanian, Venkataramanan; Lavin, José L.; Oguiza, José A.; Perez, Gumer; Pisabarro, Antonio G.; Ramirez, Lucia; Santoyo, Francisco; Master, Emma; Coutinho, Pedro M.; Henrissat, Bernard; Lombard, Vincent; Magnuson, Jon Karl; Kües, Ursula; Hori, Chiaki; Igarashi, Kiyohiko; Samejima, Masahiro; Held, Benjamin W.; Barry, Kerrie W.; LaButti, Kurt M.; Lapidus, Alla; Lindquist, Erika A.; Lucas, Susan M.; Riley, Robert; Salamov, Asaf A.; Hoffmeister, Dirk; Schwenk, Daniel; Hadar, Yitzhak; Yarden, Oded; de Vries, Ronald P.; Wiebenga, Ad; Stenlid, Jan; Eastwood, Daniel; Grigoriev, Igor V.; Berka, Randy M.; Blanchette, Robert A.; Kersten, Phil; Martinez, Angel T.; Vicuna, Rafael; Cullen, Daniel
Year: 2012   view abstract, download publication »
Title: Genome sequence of the button mushroom Agaricus bisporus reveals mechanisms governing adaptation to a humic-rich ecological niche
Source: PNAS, October 23, 2012, Volume 109, Number 43, 17501–17506, 2012.
Author(s) Morin, Emmanuelle; Kohler, Annegret; Baker, Adam R.; Foulongne-Oriol, Marie; Lombard, Vincent; Nagy, Laszlo G.; Ohm, Robin A.; Patyshakuliyeva, Aleksandrina; Brun, Annick; Aerts, Andrea L.; Bailey, Andrew M.; Billette, Christophe; Coutinho, Pedro M.; Deakin, Greg; Doddapaneni, Harshavardhan; Floudas, Dimitrios; Grimwood, Jane; Hildén, Kristiina; Kües, Ursula; LaButti, Kurt M.; Lapidus, Alla; Lindquist, Erika A.; Lucas, Susan M.; Murat, Claude; Riley, Robert W.; Salamov, Asaf A.; Schmutz, Jeremy; Subrananian, Venkataramanan; Wösten, Han A.B.; Xu, Jianping; Eastwood, Daniel C.; Foster, Gary D.; Sonnenberg, Anton S.M.; Cullen, Daniel; de Vries, Ronald P.; Lundell, Taina; Hibbett, David S.; Henrissat, Bernard; Burton, Kerry S.; Kerrigan, Richard W.; Challen, Michael P.; Grigoriev, Igor V.; Martin, Francis
Year: 2012   view abstract, download publication »
Title: Insight into tradeoff between wood decay and parasitism from the genome of a fungal forest pathogen
Source: New Phytologist (2012)
Author(s) Olson, Ake; Aerts, Andrea; Asiegbu, Fred; Belbahri, Lassaad; Bouzid, Ourdia; Broberg, Anders; Canback, Bjorn; Coutinho, Pedro M.; Cullen, Dan; Dalman, Kerstin; Deflorio, Giuliana; van Diepen, Linda T.A.; Dunand, Christophe; Duplessis, Sebastien; Durling, Mikael; Gonthier, Paolo; Grimwood, Jane; Fossdal, Carl Gunnar; Hansson, David; Henrissat, Bernard; Hietala, Ari; Himmelsrand, Kajsa; Hoffmeister, Dirk; Hogberg, Nils; James, Timothy Y.; Karlsson, Magnus; Kohler, Annegret; Kues, Ursula; Lee, Yong-Hwan; Lin, Yao-Cheng; Lind, Marten; Lindquist, Erika; Lombard, Vincent; Lucas, Susan; Lunden, Karl; Morin, Emmanuelle; Murat, Claude; Park, Jongsun; Raffaello, Tommaso; Rouze, Pierre; Salamov, Asaf; Schmutz, Jeremy; Solheim, Halvor; Stahlberg, Jerry; Velez, Heriberto; deVries, Ronald P.; Wiebenga, Ad; Woodward, Steve; Yakovlev, Igor; Garbelotto, Matteo; Martin, Francis; Grigoriev, Igor V.; Stenlid, Jan
Year: 2012   view abstract, download publication »
Title: The Paleozoic Origin of Enzymatic Lignin Decomposition Reconstructed from 31 Fungal Genomes
Source: SCIENCE VOL 336 29 JUNE 2012 (2012) DOI:1126/science.1221748, www.sciencemag.org
Author(s) Floudas, Dimitrios; Binder, Manfred; Riely, Robert; Barry, Kerrie; Blanchette, Robert A.; Henrissat, Bernard; Martínez, Angel T.; Otillar, Robert; Spatafora, Joseph W.; Yadav, Jagjit S.; Aerts, Andrea; Benoit, Isabelle; Boyd, Alex; Carlson, Alexis; Copeland, Alex; Coutinho, Pedro M.; deVries, Ronald P.; Ferreira, Patricia; Findley, Keisha; Foster, Brian; Gaskell, Jill; Glotzer, Dylan; Górecki, Pawe³; Heitman, Joseph; Hesse, Cedar; Hori, Chiaki; Igarashi, Kiyohiko; Jurgens, Joel A.; Kallen, Nathan; Kersten, Phil; Kohler, Annegret; Kües, Ursula; ArunKumar, T. K.; Kuo, Alan; LaButti, Kurt; Larrondo, Luis F.; Lindquist, Erika; Ling, Albee; Lombard, Vincent; Lucas, Susan; Lundell, Taina; Martin, Rachael; McLaughlin, David J.; Morgenstern, Ingo; Morin, Emanuelle; Murat, Claude; Nagy, Laszlo G.; Nolan, Matt; Ohm, Robin A.; Patyshakuliyeva, Aleksandrina; Rokas, Antonis; Ruiz-Dueñas, Francisco J.; Sabat, Grzegorz; Salamov, Asaf; Samejima, Masahiro; Schmutz, Jeremy; Slot, Jason C.; John, Franz St.; Stenlid, Jan; Sun, Hui; Sun, Sheng; Syed, Khajamohiddin; Tsang, Adrian; Wiebenga, Ad; Young, Darcy; Pisabarro, Antonio; Eastwood, Daniel C.; Martin, Francis; Cullen, Dan; Grigoriev, Igor V.; Hibbett, David S.
Year: 2012   view abstract, download publication »
Publication Year: 2011
 
Title: Fueling the future with fungal genomics
Source: Mycology 2011. Volume 2, Number 3. 192-209; 2011
Author(s) Grigoriev, Igor V.; Cullen, Daniel; Goodwin, Stephen B.; Hibbett, David; Jeffries, Thomas W.; Kubicek, Christian P.; Kuske, Cheryl; Magnuson, Jon K.; Martin, Francis; Spatafora, Joseph W.; Tsang, Adrain; Baker, Scott E.
Year: 2011   view abstract, download publication »
Title: Sequencing the fungal tree of life
Source: New Phytologist (2011) 190: 818-821; 2011
Author(s) Martin, F.; Cullen, D.; Hibbett, D.; Pisabarro, A.; Spatafora, J.W.; Baker, S.E.; Grigoriev, I.V.
Year: 2011   view abstract, download publication »
Title: Significant Alteration of Gene Expression in Wood Decay Fungi postia placenta and Phanerochaete chrysosporium by Plant Species
Source: Applied and Environmental Microbiology, July 2011, Volume 77, Number 13, p. 4499-4507
Author(s) Wymelenberg, Amber Vanden; Gaskell, Jill; Mozuch, Michael; BonDurant, Sandra Splinter; Sabat, Grzegorz; Ralph, John; Skyba, Oleksandr; Mansfield, Shawn D.; Blanchette, Robert A.; Grigoriev, Igor V.; Kersten, Philip J.; Cullen, Dan
Year: 2011   view abstract, download publication »
Title: The Plant Cell Wall-Decomposing Machinery Underlies the Functional Diversity of Forest Fungi
Source: Science. 333: 762-765; 2011
Author(s) Eastwood, Daniel C.; Floudas, Dimitrios; Binder, Manfred; Majcherczyk, Andrezej; Schneider, Patrick; Aerts, Andrea; Asiegbu, Fred O.; Baker, Scott E.; Barry, Derrie; Bendiksby, Mika; Blumentritt, Melanie; Countinho, Pedro M.; Cullen, Dan; de Vries, Ronald
Year: 2011   view abstract, download publication »
Title: Understanding LiP Promoters from Phanerochaete chrysosporium: A Bioinformatic Analysis
Source: Selected Works in Bioinformatics
Author(s) Lobos, Sergio; Polanco, Rubén; Tello, Mario; Cullen, Dan; Seelenfreund, Daniela; Vicuña, Rafael
Year: 2011   view abstract, download publication »
Publication Year: 2010
 
Title: Comparative Transcriptome and Secretome Analysis of Wood Decay Fungi Postia placenta and Phanerochaete chrysosporium
Source: APPLIED AND ENVIRONMENTAL MICROBIOLOGY, June 2010, p. 3599-3610; 2010
Author(s) Wymelenberg, Amber Vanden; Gaskell, Jill; Mozuch, Michael; Sabat, Grzegorz; Ralph John; Skyba, Oleksandr; Mansfield, Shawn D.; Blanchette, Robert A.; Martinez, Diego; Grigoriev, Igor; Kersten, Philip J.; Cullen, Dan
Year: 2010   view abstract, download publication »
Title: Laccase and Its Role in Production of Extracellular Reactive Oxygen Species during Wood Decay by the Brown Rot Basidiomycete Postia placenta
Source: APPLIED AND ENVIRONMENTAL MICROBIOLOGY, Apr. 2010, p. 2091-2097; 2010
Author(s) Wei, Dongsheng; Houtman, Carl J.; Kapich, Alenander N.; Hunt, Christopher G.; Cullen, Daniel; Hammel, Kenneth E.
Year: 2010   view abstract, download publication »
Publication Year: 2009
 
Title: Comparative analysis of white rot and brown rot fungi: genomes, transcriptomes and secretomes
Source: In: Proceeding of the 9th conference on fungal genetics and molecular biology in 2009.2009 November 18-19; Tokyo, Japan. Tokyo, Japan: Fungal Molecular Biology Society of Japan. 2009
Author(s) Wymelenberg, Amber Vanden; Gaskell, Jill; Mozuch, Mike; Kersten, Phil; Cullen, Dan; Sabat, Grzegorz; Martinez, Diego; Grigoriev, Igor; Blanchette, Robert
Year: 2009   view abstract, download publication »
Title: Genome, transcriptome, and secretome analysis of wood decay fungus Postia placenta supports unique mechanisms of lignocellulose conversion
Source: PNAS, vol.106 no.6, pp. 1954-1959; February 10, 2009
Author(s) Kersten, Phil; Hammel, Kenneth E.; Gaskell, Jill; Cullen, Dan and others
Year: 2009   view abstract, download publication »
Title: Genome, Transcriptome, and secretome analysis of wood decay fungus Postia plancenta supports unique mechanisms of lignocellulose conversion
Source: 1954-1959, PNAS, February 10, 2009 ; vol. 106, no. 6; 2009
Author(s) Kersten, Phil; Hammel, Kenneth E.; Gaskell, Jill; Cullen, Dan and others
Year: 2009   view abstract, download publication »
Title: Transcriptome and Secretome Analyses of Phanerochaete chrysosporium Reveal Complex Patterns of Gene Expression
Source: APPLIED AND ENVIRONMENTAL MICROBIOLOGY, June 2009,Vol. 75, No. 12, p. 4058-4068; 2009
Author(s) Wymelenberg, Amber Vanden; Gaskell, Jill; Mozuch, Mike; Kersten, Phil; Sabat, Grzegorz; Martinez, Diego; Cullen Dan
Year: 2009   view abstract, download publication »
Publication Year: 2008
 
Title: Differential Expression in Phanerochaete chrysosporium of Membrane-Associated Proteins Relevant to Lignin Degradation
Source: APPLIED AND ENVIRONMENTAL MICROBIOLOGY, Dec. 2008, p. 7252-7257
Author(s) Shary, Kapich, Panisko, Magnuson, Cullen, Hammel
Year: 2008   view abstract, download publication »
Title: Fungal symbiosis unearthed
Source: NATURE | Vol 452 | 6 March 2008; pp. 42-43; 2008
Author(s) Cullen
Year: 2008   view abstract, download publication »
Title: Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina)
Source: NATURE BIOTECHNOLOGY VOLUME 26 NUMBER 5, MAY 2008, pp. 553-560
Author(s) Martinez,; Berka, Henrissat, Saloheimo, Arvas, Baker, Chapman, Chertkov, Coutinho, Cullen, Danchin, Grigoriev, Harris, Jackson, Kubicek, Han, Ho, Larrondo, Lopez de Leon, Magnuson, Merino, Misra, Nelson, Putnam, Robbertse, Salamov, Schmoll, Terry, Thayer,
Year: 2008   view abstract, download publication »
Title: Role of fungal peroxidases in biological ligninolysis
Source: Current opinion in plant biology. Vol. 11 (2008): Pages 349-355
Author(s) Hammel, Kenneth E.; Cullen, Dan
Year: 2008   view abstract, download publication »
Publication Year: 2007
 
Title: Extracellular oxidative systems of the lignin-degrading Basidiomycete Phanerochaete chrysosporium
Source: Forest genetics and biology. Vol. 44 (2007): pages 77-87.
Author(s) Kersten, Phil; Cullen, Dan
Year: 2007   view abstract, download publication »
Title: Structure and transcriptional impact of divergent repetitive elements inserted within Phanerochaete chrysosporium strain RP-78 genes
Source: Molecular genetics and genomics. Vol. 277 (2007): pages 43-55.
Author(s) Larrondo, Luis F.; Canessa, Paulo; Vicuna, Rafael; Stewart, Philip; Vanden Wymelenberg, Amber; Cullen, Dan
Year: 2007   view abstract, download publication »
Title: The genome of an industrial workhorse : sequencing of the filamentous fungus Aspergillus niger offers new opportunities for the production of specialty chemicals and enzymes
Source: Nature biotechnology. Vol. 25, no. 2 (Feb. 2007): Pages 189-190
Author(s) Cullen, Dan
Year: 2007   view abstract, download publication »
Publication Year: 2006
 
Title: Computational analysis of the Phanerochaete chrysosporium v2.0 genome database and mass spectrometry identiWcation of peptides in ligninolytic cultures reveal complex mixtures of secreted proteins
Source: Fungal genetics and biology. Vol. 43 (2006): pages 343-356.
Author(s) Vanden Wymelenberg, Amber; Minges, Patrick; Sabat, Grzegorz; Martinez, Diego; Aerts, Andrea; Salamov, Asaf; Grigoriev, Igor; Shapiro, Harris; Putnam, Nik; Belinky, Paula; Dosoretz, Carlos; Gaskell, Jill; Kersten, Phil; Cullen, Dan
Year: 2006   view abstract, download publication »
Title: Structure, organization, and transcriptional regulation of a family of copper radical oxidase genes in the lignin-degrading basidiomycete Phanerochaete chrysosporium
Source: Applied and environmental microbiology. Vol. 72, no. 7 (July 2006): p. 4871-4877.
Author(s) Vanden Wymelenberg, Amber; Sabat, Grzegorz; Mozuch, Michael; Kersten, Philip J.; Cullen, Dan; Blanchette, Robert A.
Year: 2006   view abstract, download publication »
Publication Year: 2005
 
Title: Phanerochaete chrysosporium genomics
Source: Applied mycology and biotechnology. Volume 5, Genes and genomics. Amsterdam : Boston : Elsevier, 2005: ISBN: 0444518088: 9780444518088: p. [315]-352.
Author(s) Larrondo, Luis F.; Vicuna, Rafael; Cullen, Dan
Year: 2005   view abstract, download publication »
Title: The nop gene from Phanerochaete chrysosporium encodes a peroxidase with novel structural features
Source: Biophysical chemistry. Vol. 116 (2005): pages 167-173
Author(s) Larrondo, Luis F.; Gonzalez, Angel; Perez-Acle, Tomas; Cullen, Dan; Vicuna, Rafael
Year: 2005   view abstract, download publication »
Title: The Phanerochaete chrysosporium secretome : database predictions and initial mass spectrometry peptide identifications in cellulose-grown medium
Source: Journal of biotechnology. Vol. 118 (2005): p. 17-34.
Author(s) Vanden Wymelenberg, Amber J.; Sabat, Grzegorz; Martinez, Diego; Rajangam, Alex S.; Teeri, Tuula T.; Gaskell, Jill A.; Kersten, Philip J.; Cullen, Daniel
Year: 2005   view abstract, download publication »
Publication Year: 2004
 
Title: Characterization of a multicopper oxidase gene cluster in Phanerochaete chrysosporium and evidence of altered splicing of the mco transcripts
Source: Microbiology. Vol. 150 (2004): Pages 2775-2783
Author(s) Larrondo, Luis F.; Gonzalez, Bernardo; Cullen, Dan; Vicuna, Rafael
Year: 2004   view abstract, download publication »
Title: Enzymology and molecular biology of lignin degradation
Source: The Mycota III : biochemistry and molecular biology. Berlin ; Heidelberg : Springer-Verlag, 2004: Pages 249-273
Author(s) Cullen, D.; Kersten, P.J.
Year: 2004   view abstract, download publication »
Title: Genome sequence of the lignocellulose degrading fungus Phanerochaete chrysosporium strain RP78
Source: NATURE BlOTECHNOLOGY VOLUME 22 NUMBER 6 JUNE 2004
Author(s) Martinez, Diego; Larrondo, Louis F.; Putnam, Nik; Gelpke, Maarten D. Sollewijn; Huang, Katherine; Chapman, Jarrod; Helfenbein, Kebin G.; ramaiya, Preethi; Detter, J. Chris; Larimer, Frank; Coutinho, Pedro M.; Henrissat, Bernard; Berka, Randy; Cullen, Dani
Year: 2004   view abstract, download publication »
Title: Isolation and purification of pyranose 2-oxidase from Phanerochaete chrysosporium and characterization of gene structure and regulation
Source: Applied and environmental microbiology. Vol. 70, no. 10 (Oct. 2004): Pages 5794-5800
Author(s) de Koker, Theodorus H.; Mozuch, Michael D.; Cullen, Daniel; Gaskell, Jill; Kersten, Philip J.
Year: 2004   view abstract, download publication »
Title: Messenger RNA transcripts
Source: Biodiversity of fungi : inventory and monitoring methods. Amsterdam : Elsevier Academic Press, 2004: Pages 85-88
Author(s) Cullen, Dan
Year: 2004   view abstract, download publication »
Publication Year: 2003
 
Title: A novel extracellular multicopper oxidase from Phanerochaete chrysosporium with ferroxidase activity
Source: Applied and environmental microbiology. Vol. 69, no. 10 (Oct. 2003): Pages 6257-6263
Author(s) Larrondo, Luis F.; Salas, Loreto; Melo, Francisco; Vicuna, Rafael; Cullen, Daniel
Year: 2003   view abstract, download publication »
Title: Heterologous expression of laccase cDNA from Ceriporiopsis subvermispora yields copper-activated apoprotein and complex isoform patterns
Source: Microbiology. Vol. 149 (2003): pages 1177-1182.
Author(s) Larrondo, Luis F.; Avila, Marcela; Salas, Loreto; Cullen, Dan; Vicuna, Rafael
Year: 2003   view abstract, download publication »
Publication Year: 2002
 
Title: 5 Molecular Genetics of Lignin-Degrading Fungi and Their Applications in Organopollutant Degradation
Source: In: The Mycota A comprehensive treatise on Fungi as Experimental Systems for Basic and Applied Research. XI Agricultural Applications 2002; pp. 71-90.
Author(s) Cullen, Daniel
Year: 2002   view abstract, download publication »
Title: An NADH:Quinone Oxidoreductase Active during Biodegradatikon by the Brown-Rot Basidiomycete Gloeophyllum trabeum
Source: APPLIED AND ENVIRONMENTAL MICROBIOLOGY, June 2002, p. 2699-2703
Author(s) Jensen, Ryan, Wymelenberg, Cullen, Hammel
Year: 2002   view abstract, download publication »
Title: Differential regulation of mnp2, a new manganese peroxidase-encoding gene from the ligninolytic fungus Trametes versicolor PRL 572
Source: Applied and environmental microbiology. Vol. 68, no. 4 (Apr. 2002): Pages 2077-2080
Author(s) Johansson, Tomas; Nyman, Per Olof; Cullen, Daniel
Year: 2002   view abstract, download publication »
Title: Molecular genetics of lignin-degrading fungi and their applications in organopollutant degradation
Source: The mycota : a comprehensive treatise on fungi as experimental systems for basic and applied research 11, Agricultural applications. Berlin ; London : Springer, c2002: pages [71]-90.
Author(s) Cullen, Daniel
Year: 2002   view abstract, download publication »
Publication Year: 2001
 
Title: Isolation and characterization of homokaryotic strains from the ligninolytic baqsidiomycete Cerioporiopsis subvermispora
Source: FEMS Microbiology Letters 199 (2001) 91-96
Author(s) Tello, Seelenfreund, Lobos, Gaskell, Cullen, Vicuna
Year: 2001   view abstract, download publication »
Publication Year: 2000
 
Title: A homokaryotic derivative of a Phanerochaete chrysosporium strain and its use in genomic analysis of repetitive elements
Source: Applied and environmental microbiology. Vol. 66, no. 4 (Apr. 2000).:p. 1629-1633 : ill.
Author(s) Stewart, Philip.; Gaskell, Jill.; Cullen, Daniel.
Year: 2000   view abstract, download publication »
Publication Year: 1999
 
Title: Identification of Catalytic Residues in Glyoxal Oxidase by Targeted Mutagenesis
Source: The Journal of Biological Chemistry,Vol. 274, No. 51, Issue of December 17, pp. 36226-36232, 1999
Author(s) Wittaker, Mei M.; Kersten, Philip J.; Cullen, Daniel; Whittaker, James W.
Year: 1999   view abstract, download publication »
Title: Identification of Catalytic Residues in Glyoxal Oxidase by Targeted Mutagenesis*
Source: J. BIOLOGICAL CHEMISTRY. Vol. 274, No. 61, pp. 36226-36232, 1999
Author(s) Whittaker, M., Kersten, Cullens, Whittaker, J.
Year: 1999   view abstract, download publication »
Title: Organization and differential regulation of a cluster of lignin peroxidase genes of Phanerochaete chrysosporium
Source: Journal of bacteriology. Vol. 181 (June 1999).:p. 3427-3432 : ill.
Author(s) Stewart, Philip.; Cullen, Daniel.
Year: 1999   view abstract, download publication »
Title: [34] Fluorenscent Labels, Confocal Microscopy, and Quantitative Image Analysis in Study of Fungal Biology
Source: METHODS IN ENZYMOLOGY, VOL. 307; pp. 607-623
Author(s) Spear, Russell; Cullen, Daniel; Andrews, John;
Year: 1999   view abstract, download publication »
Publication Year: 1998
 
Title: 9 Enzymology and Molecular Genetics of Wood Degradation by White-Rot Fungi
Source: Environmentally Friendly Technologies for the Pulp and Paper lndustry
Author(s) Kirk, T. K.; Cullen, Dan
Year: 1998   view abstract, download publication »
Title: Biochemical and molecular characterization of South African strains of Phanerochaete chrysosporium
Source: Mycroi. Res. 102 (1): 88- 92 (1998)
Author(s) Koker, Theodorus H.; Zhao, Jiong; Cullen, Dan; Janse, Bernard J.H.
Year: 1998   view abstract, download publication »
Title: Expression of Phanerochaete chysosporium Genes Encoding Lignin Peroxidases, Manganese Peroxidases, and Glyoxal Oxidase in Wood
Source: APPLIED AND ENVIRONMENTAL MICROBIOLOGY, Sept. 1998, p. 3536-3538
Author(s) Jense, Bernard J.H.; Gaskell, Jill; Akhtar, Masood; Cullen, Daniel
Year: 1998   view abstract, download publication »
Title: Fungal cellobyohydrolases and the degradation of crystaline cellulose
Source: MIE BIOFORUM 98, GENETICS, BIOCHEMISTRY AND ECOLGOY OF CELLUSOSE DEGRADATION. 1998. p.25
Author(s) Teeri, Tuula T.; Cullen, Daniel; Divne, Christina; Denman, Stuart; Jones, T.A.; Koivula, Anu; Linder, Markus; Stahlberg, Jerry; Wohlfart, Gerd; Ossowski, Ingenmar O.; Zou, Jin-Yu
Year: 1998   view abstract, download publication »
Title: Phanerochaete chrysosporium Cellobiohydrolase and Cellobiose Dehydrogenase Transcripts in Wood
Source: APPLIED AND ENVIRONMENTAL MICROBIOLOGY, May 1998, Vol. 64, No. 5; p. 1924-1928
Author(s) Vallim, Marcelo A.; Janse, Bernard J.H.; Gaskell, Jill; Pizzirani-Kleiner, Aline, A.; Cullen, Daniel
Year: 1998   view abstract, download publication »
Title: Transcript patterns of Phanerochaete chrysosporium genes in organopollutant contaminated soils and in wood
Source: [Proceedings of the fourth meeting on the Genetics and Cellular Biology of Basidiomycetes : 1998 March 27-30, Nijmegen, The Netherlands. Horst, The Netherlands : Mushroom Experimental Station, 1998].:p. 89-93 : ill.
Author(s) Vanden Wymelenberg, Amber.; Janse, Bernard.; Gaskell, Jill.; Dietrich, Diane.; Vallim, Marcelo.; Cullen, Dan.
Year: 1998   view abstract, download publication »
Title: TRANSCRIPT PATTERNS OF PHANEROCHETE CHRYSOSPORIUM LIGNIN PEROXIDASE GENES IN ORGANOPOLLUTANT - CONTAMINATED SOILS AND IN WOOD
Source: Genetics and Cellular Biology of Basidiomycetes IV. 1998. p. 18
Author(s) Wymelenberg, Amber V.; Janse, Bernard; Gaskell, Jill; Dietrich, Diane; Cullen, Dan
Year: 1998   view abstract, download publication »
Publication Year: 1997
 
Title: Are Bacteria Omnipresent on Phanerochaete chrysosporium Burdsall?
Source: APPLIED AND ENVIRONMENTAL MICROBIOLOGY, July 1997, p. 2913-2914 Vol. 63, No. 7
Author(s) Janse, J. H.; Gaskell, J.; Cullen, D.; Zapanta, L.; Dougherty, J.; Tien, M.
Year: 1997   view abstract, download publication »
Title: Expression of Green Fluorescent Protien in Aureobasidium pullans and Quantification of hte Fungus on Leaf Surfaces
Source: BioTechniques 23:686-690 (October 1997)
Author(s) Wymelenberg, A. J.; Cullen, D.; Spear, R. N.; Schoenike, B.; Andrews, J. H.
Year: 1997   view abstract, download publication »
Title: Recent advances on the molecular genetics of ligninolytic fungi
Source: Journal of Biotechnology 53 (1997) 273-289
Author(s) Cullen, Daniel
Year: 1997   view abstract, download publication »
Publication Year: 1996
 
Title: Development of an Oligonucleotide Probe for Aureobasidium pullulans Based on the Small-subunit rRNA Gene
Source: APPLIED AND ENVIRONMENTAL MICROBIOLOGY, May 1996, p. 1514-1518 Vol. 62, No. 5
Author(s) Li, Shuzian; Cullen, Daniel; Hjort, Mary; Spear, Russell; Andrews, John H.
Year: 1996   view abstract, download publication »
Title: Efficient Expression of a Phanerochaete chrysosporium Manganese Peroxidase Gene in Aspergillus oryzae
Source: Applied and Environmental Microbiology, Vol. 62, no. 3, Mar. 1996, pp. 860-864
Author(s) Stewart, Philip, Whitman, Ross E.; Kersten, Philip J.; Cullen, Daniel; Tien, Ming
Year: 1996   view abstract, download publication »
Title: Enzymology and Molecular Biology of Lignin Degradation
Source: Biochemistry and Molecular Biology 1996, p. 295-312
Author(s) Cullen, D.; Kersten, P.J.
Year: 1996   view abstract, download publication »
Title: Expression of lip Genes During Growth in Soil and Oxidation of Anthracene by Phanerochaete chrysosporium
Source: Applied and Environmental Microbiology, Vol. 62, no. 10, Oct. 1996, pp. 3697-3703
Author(s) Bogan, Bill W.; Schoenike, Barry; Lamar, Richard T.; Cullen, Dan
Year: 1996   view abstract, download publication »
Title: lip - Like Genes in Phanerochaete sordida and Ceriporiopsis subvermispora, White Rot Fungi with No Detectable Lignin Peroxidase Activity
Source: APPLIED AND ENVIRONMENTAL MICROBIOLOGY, July 1996, p. 2660-2663
Author(s) Rajakumar, Suseela; Gaskell, Jill; Cullen, Daniel; Lobos, Sergio; Karahanian, Eduardo; Vicuna, Rafael
Year: 1996   view abstract, download publication »
Title: Manganese Peroxidase mRNA and Enzyme Activity Levels during Bioremediation of Polycyclic Aromatic Hydrocarbon-Contaminated soil with Phanerochaete chrysosporium
Source: Applied and Environmental Microbiology, July 1996, p. 2381-2386
Author(s) Bogan, Bill W.; Schoenike, Barry; Lamar, Richard T.; Cullen, Dan
Year: 1996   view abstract, download publication »
Publication Year: 1995
 
Title: Phanerochaete chrysosporium Gloyoxal Oxidase Is Encoded by Two Allelic Variants: Structure, Genomic Organizaiton, and Heterologous Expression of glx1 and glx2
Source: JOURNAL OF BACTERIOLOGY, Nov. 1995, p. 6106-6110
Author(s) Kersten, Philip J.; Witek, Christian; Vanden Wymelenberg, Amber; Cullen, Daniel
Year: 1995   view abstract, download publication »
Title: Properties of laccase isoenzymes produced by the basidiomycete Ceriporiopsis subvermispora
Source: Biotechnol. Appl. Biochem. 21, 323-333 [1995]
Author(s) Salas, Carlos; Lobos, Sergio; Larrain, Juan; Salas, Loreto; Cullen, Dan; Vicuna, Rafael
Year: 1995   view abstract, download publication »
Title: Quantitation of Fungal mRNAs in Complex Substrates by Reverse Transcription PCR and Its Application to Phanerochaete chrysosporium-Colonized Soil
Source: Applied and Environmental Microbiology, Vol. 61, no. 6, June 1995, pp. 2122-2126
Author(s) Lamar, R. T.; Schoenike, B.; Vanden Wymeleberg, A.; Stewart, P.; Dietrich, D. M.; Cullen, D.
Year: 1995   view abstract, download publication »
Title: Structure, inheritance, and transcriptional effects of Pce1, an insertional element within Phanerochaete chrysosporium lignin peroxidase gene lipI
Source: Proc. Natl. Acad. Sci. USA Vol. 92, pp. 7465-7469, August 1995 Biochemistry
Author(s) Gaskell, Jill; Vanden Wymellenberg, Amber; Cullen, Daniel
Year: 1995   view abstract, download publication »
Publication Year: 1994
 
Title: Characterization of a cDNA encoding a manganese peroxidase from Phanerochaete chrysosporium: genomic organization of lignin and manganese peroxidase-encoding genes
Source: Gene, 148 (1994) 161-165; 1994
Author(s) Orth, Ann B.; Rzhetskaya, Margarita; Cullen, Daniel; Tien, Ming
Year: 1994   view abstract, download publication »
Title: Establishment of Genetic Linkage by Allele-specific Polymerase Chain Reaction: Application to the Lignin Peroxidase Gene Family of Phanerochaete chrysosporium
Source: BIO/TECHNOLOGY VOL. 12 DECEMBER 1994, pp. 1372-1375
Author(s) Gaskell, Jill; Stewart, Phillip; Kersten, Phillip; Covert, Sarah F.; Reiser, Jakob; Cullen, Daniel
Year: 1994   view abstract, download publication »
Title: Isoenzymes of manganese-dependent peroxidase and laccase produced by the lignin-degrading basdiomycete Ceriporiopsis subvermispora
Source: Microbiology (1994), 140, 2691-2698; 1994
Author(s) Lobos, Sergio; Larrain, Juan; Salas, Loreto; Cullen, Daniel; Vicuna, Rafael
Year: 1994   view abstract, download publication »
Title: Manganese Peroxidases of the White Rot Fungus Phanerochaete sordida
Source: APPLIED AND ENVIROMENTAL MICROBIOLOGY, Feb 1994, Vol. 60, No. 2, p. 599-605; 1994
Author(s) RUTTIMANN-JOHNSON, CARMEN; CULLEN, DANIEL; LAMAR, RICHARD T.
Year: 1994   view abstract, download publication »
Publication Year: 1993
 
Title: Biopulping A Glimpse of the Future?
Source: FPL-RP-523, December 1993; Forest Products Laboratory Research Paper
Author(s) Kirk, T.K.; Koning, John W.; Burgess, Richard R.; Akhtar, Massod; Blanchette, Robert A.; Cameron, Douglas C.; Cullen, Daniel; Kersten, Philp J.; Lightfoot, Edwin N.; Myers, Gary C.; Sachs, Irving; Skyes, Marguerite; Wall, Mary B.
Year: 1993   view abstract, download publication »
Title: Cloning and characterization of a cDNA encoding glyoxal oxidase, a H2O2-producing enzyme from the lignin-degrading basidiomycete Phanerochaete chrysosporium
Source: Proc. Natl. Acad. Sci.; Vol. 90, pp. 7411-7413, August 1993
Author(s) Kersten, Philip J.; Cullen, Daniel
Year: 1993   view abstract, download publication »
Title: Identification of the Gene Encoding the Major Cellobiohydrolase of the White Rot Fungus Phanerochaete chrysosporium
Source: Applied and Environmental Microbiology, Oct. 1993, p. 3492-3494; 1993
Author(s) Wymelenberg, Amber Vanden; Covert, Sarah; Cullen, Daniel
Year: 1993   view abstract, download publication »
Title: Recent Advances in the Organization and Regulation of Lignin Peroxidase Genes of Phanerochaete chrysosporium
Source: Journal of Biotechnology, Vol. 30, 1993, pp. 109-114
Author(s) Gaskell, Jill; Cullen Daniel
Year: 1993   view abstract, download publication »
Publication Year: 1992
 
Title: 4 Fungal enzymes for lignocellulose degradation
Source: In: Kinghorn, J.R.; Turner, G., eds. Applied Molecular genetics of filamentous fungi. New York: chapman & Hall; 1992. Chapter 4. p. 100-131
Author(s) Cullen, D.; Kersten, P.
Year: 1992   view abstract, download publication »
Title: Genomic organization of a cellulase gene familyin Phanerochaete chrysosporium
Source: Curr Genet (1992) 22:407-413
Author(s) Covert, Sarah F.; Bolduc, Jennifer; Cullen, Dan
Year: 1992   view abstract, download publication »
Title: Lignin Peroxidase Gene Family of Phanerochaete chrysosporium: Complex Regulation by Carbon and Nitrogen Limitation and Identification of a Second Dimorphic Chromosome
Source: JOURNAL OF BACTERIOLOGY, Aug. 1992, p. 5036-5042; 1992
Author(s) Stewart, Philip; Kersten, Philip; Wymelenberg, Amber Vanden; Gaskell, Jill; Cullen, Daniel
Year: 1992   view abstract, download publication »
Title: Method To Identify Specific Alleles of a Phanerochaete chrysosporium Gene Encoding Lignin Peroxidase
Source: APPLIED AND ENVIRONMENTAL MICROBIOLOGY, Apr. 1992, p. 1379-1381; 1992
Author(s) Gaskell, Jill; Wymellenberg, Amber Vanden; Stewart, Philip; Cullen, Daniel
Year: 1992   view abstract, download publication »
Title: Structure, Organization, and Transcription of a Cellobiohydrolase Gene Cluster from Phanerochaete chrysosporium
Source: APPLIED AND ENVIRONMENTAL MICROBIOLOGY, July 1992, p. 2168-2175; 1992
Author(s) Covert, Sarah F.; Wymelenberg, Amber Vanden; Cullen, Daniel
Year: 1992   view abstract, download publication »
Publication Year: 1991
 
Title: Genetic transformation of Aureobasidium pullulans
Source: J. Biotechnology, 21 (1991) 283-288
Author(s) Cullen, D.; Yang, V.; Jeffries, T.; Bolduc, J.; Andrews, J. H.
Year: 1991   view abstract, download publication »
Title: Genomic organization of lignin peroxidase genes of Phanerochaete chrysosporium
Source: Nucleic Acids Research, Vol. 19, No. 3; pp. 599-603; 1991
Author(s) Gaskell, Jill; Dieperink, Eric; Cullen, Daniel
Year: 1991   view abstract, download publication »
Publication Year: 1990
 
Title: The promoter of the glucoamylase-encoding gene of Aspergillus niger functions in Ustilago maydis
Source: Gene, 88 (1990) 259-262
Author(s) Smith, Timothy L.; Gaskell, Jill; Berka, Randy M.; Yang, Maria; Henner, Dennis J.; Cullen, Daniel
Year: 1990   view abstract, download publication »
Publication Year: 1989
 
Title: Molecular Cloning and Sequences of Lignin Peroxidase Genes of Phanerochaete chysosporium
Source: Molecular and Cellular Biology, June 1989, p. 2743-2747
Author(s) Schalch, Heidi; Gaskell, Jill; Smith, Timothy L.; Cullen, Daniel
Year: 1989   view abstract, download publication »
Publication Year: 1988
 
Title: Nucleotide sequence of a ligninase gene from Phanerochaete chrysosporium
Source: Nucleic Acids Research, Vol. 16, No. 3; 1988
Author(s) Smith, Timothy L.; Schalch, Heidi; Covert, Sarah; Cullen, Daniel
Year: 1988   view abstract, download publication »
Publication Year: 1987
 
Title: Controlled Expression and Secretion of Bovine Chymosin in Aspergillus Nidulans
Source: Bio/Technology Vol. 5, April 1987, p. 369-376
Author(s) Cullen, Daniel; Gray, Gregory L.; Wilson, Lori J.; Hayenga, Kirk J.; Lamsa, Michael H.; Rey, Michael W.; Norton, Shirley; Berka, Randy M.
Year: 1987   view abstract, download publication »
Title: Sequence and centromere proximal location of a transformation enhancing fragment ans1 from Aspergillus nidulans
Source: Nucleic Acids Research, Vol 15, Number 22, pp. 9163-9175; 1987
Author(s) Cullen, D.; Wilson, L.J.; Grey, G.L.; Henner, D.J.; Turner, G.; Balance, D.J.
Year: 1987   view abstract, download publication »
Title: Transformation of Aspergillus nidulans with the Hygromycin-Resistance Gene, hph
Source: Gene, Vol. 57, 1987, pp. 21-26
Author(s) Cullen, D.; Leong, S. A.; Wilson, L. J.; Henner, D. J.
Year: 1987   view abstract, download publication »
 
Publication Year: 2020
Sequenced fungal species described in this study
Highlight ID: 1643		Gene Conservation Among Lignocellulose-Degrading Fungi

By examining the number, structure, and expression of fungal genes an international team of researchers have demonstrated conserved mechanisms of lignocellulose deconstruction. ...
 
Publication Year: 2019
Basidiocarp of brown rot fungus Fomitopsis pinicola. University of Minnesota
Highlight ID: 1335		Patterns of Gene Expression Provide Insight into Wood Decay Mechanisms

Comparative examination of gene regulation reveal significant differences among brown rot fungi when colonizing different wood species. ...
 
Publication Year: 2017
White rot fungus, Panerochaete chrysosporium colonizing wood chips.
Highlight ID: 1295		Genetic basis of lignocellulose degradation

Exploiting the recent availability of fungal genomes, Forest Service researchers have developed computational approaches for the identification of key wood decay enzymes. ...
 
Publication Year: 2016
Postia, a genus of brown rot fungi. Dan Cullen, U.S. Department of Agriculture Forest Service.
Highlight ID: 665		Fungi Use Multiple Strategies for Deconstruction of Woody Biomass

A diverse array of enzymes catalyze the bioconversion of wood toward biofuels and other high-value products. ...
 
Publication Year: 2013
Three dimensional model of the Button Mushroom enzyme that metabolizes degraded leaf litter. Daniel Cullen, USDA Forest Service
Highlight ID: 445		Common Button Mushroom Studied for Key Role in Recycling Carbon

Recent genome studies of Agaricus reveal specialized adaptations to litter- and soil-rich environments which may be used to remediate contaminated soils. ...
Fruit bodies of sequenced wood decay fungi Bjerkandera adusta (right image) and Ganoderma species (left image). Robert Blanchette, University of Minnesota
Highlight ID: 446		Research Demystifies Wood Decaying Fungi

Newly sequenced fungal genomes provide insight into the enzymatic conversion of wood into high value products. ...
 
Publication Year: 2012
Wood decay fungus Ceriporiopsis subvermispora colonizing wood vessels. Robert Blanchette, University of Minnesota
Highlight ID: 9		Hidden Lives of Wood Decay Fungi Uncovered by Genome Sequencing

The decoded genomes of 12 species reveal a complex repertoire of proteins involved in the deconstruction of key polymers within wood cell walls ...
 
Publication Year: 2010

Highlight ID: 178		Fast Forward' Genetics for Renewable Fuels

Researchers at the Forest Products Laboratory used mutagenesis, strain selection and genetic manipulation over a period of seven years to develop improved strains of yeasts that will produce renewable fuel (ethanol) from wood residues. ...
Research Projects serving in the role of Principal Investigator
 
Project NameStart DateEnd Date
 
Optimizing lignocellulose-degrading fungi for bioprocessing and bioconversion of wood requires understanding the functional genomics of fung

Total affiliated publications: 23
10-01-201209-30-2019
TitleDate Posted
Pine log extensively colonized by Phlebiopsis gigantea showing fruiting structures from which spores are released. Photo: Robert Blanchette and Benjamin Held, University of Minnesota.Genetics Provide Valuable Insight into Mysterious Decay Fungi

Valuable insights to developing effective biological control agents for protecting conifer trees from root rot have been discovered...

01-02-2015
Pulp NonFiction: Fungal Analysis Reveals Clues for Targeted Biomass Deconstruction

Without fungi and microbes to break down dead trees and leaf litter in nature, the forest floor might look like a scene from TV's "Hoarders." Dan Cullen, research microbiologist at the FPL, is part of an international team of scientists studying the genomic make-up of two fungi species that are espe...

05-02-2012